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Sélection de publications, communications et brevets
2012
Lamy J-B, Soualmia LF, Kerdelhué G, Venot A, Duclos C. Validating the semantics of a medical iconic language using ontological reasoning. Journal of Biomedical Informatics, 2012 (à paraître)
Séroussi B, Soulet A, Messai N, Laouénan C, Mentré F, Bouaud J. Patient clinical profiles associated with physician non-compliance despite the use of a guideline-based decision support system: a case study with OncoDoc2 using data mining techniques. AMIA Annu Symp Proc, 2012 (à paraître)
Darmoni S, Soualmia L, Letord C, Griffon N, Jaulent MC, Thirion B Névéol A. Improving information retrieval using MeSH Concepts : a test case on rare and chronic diseases. Journal of the Medical Library Association, 100(3): 176–183, 2012
Belhadj I, Nobécourt J, Després S, Jacquelinet C. The issue of building generative terminologies for automatic medical data aggregation, Stud Health Technol Inform, 180:174-8, 2012
Dupuch M, Dupuch L, Perinet A, Hamon T, Grabar N. Grouping the Pharmacovigilance terms with a Hybrid Approach. Stud Health Technol Inform, 180:235-9, 2012
Camara G, Després S, Djedidi R, Lô M. – "Towards an ontology for an Epidemiological Monitoring System". In proceedings of the 9th International Conference on Information Systems for Crisis Response and Management (ISCRAM 2012), Vancouver, April 2012.
2011
Yasini M, Duclos C, Lamy JB, Venot A. Facilitating access to laboratory guidelines by modeling their contents and designing a computerized user interface. Stud Health Technol Inform, 169:487-91,2011.
Merabti T, Soualmia L, Grosjean J, Palombi O, Muller JM, Darmoni, SJ. Translating the Foundational Model of Anatomy into French using Knowledge-based and Lexical Methods. BMC Medical Informatics and Decision Making,11,65,2011.
Lamy JB, Ebrahiminia V, Séroussi B, Bouaud J, Simon C, Favre M, Falcoff H, Venot A. A generic system for critiquing physicians prescriptions : usability, satisfaction and lessons learnt. Stud Health Technol Inform, 169:125–129, 2011
Bouaud J, Séroussi B. Revisiting the EBM decision model to formalize non-compliance with computerized CPGs : results in the management of breast cancer with OncoDoc2. AMIA Annu Symp Proc:125-34, 2011.
2010
Duclos C, Soualmia L, Krivine S, Jamet A, Lillo-Louët A. Modeling, building and evaluating an ontology for the automatic characterization of adverse drug effects during pharmacovigilance. Stud Health Technol Inform, 160:1005-1009, 2010.
Grabar N, Hamon T. Exploitation of linguistic indicators for automatic weighting of synonyms induced within three biomedical terminologies. Stud Health Technol Inform, 160:1015-1019, 2010.
Nadeem MSA, Zucker JD, Hanczar B. Accuracy-Rejection Curves (ARCs) for Comparing Classification Methods with a Reject Option. Journal of Machine Learning Research,8:68-81,20
Hamon T, Grabar N. Linguistic approach for identification of medication names and related information in clinical narratives. Journal of the American Medical Informatics Association,17,5:549-554,2010.Lamy JB, Ebrahiminia V, Riou C, Seroussi B, Bouaud J, Simon C, Dubois S, Butti A, Simon G, Favre M, Falcoff H, Venot A How to translate therapeutic recommendations in clinical practice guidelines into rules for critiquing physician prescriptions? Methods and application to five guidelines. BMC Med Inform Decis Mak,10:31, 2010.
2009
Toussi M, Lamy JB, Le Toumelin P, Venot A. Using data mining techniques to explore therapeutic decisions when clinical guidelines do not provide recommendations: methods and example for type 2 diabetes. BMC Med Inform Decis Mak. 2009 Jun 10;9:28.
Kergosien YL. Distance-driven adaptive trees in biologic metric spaces: uninformed accretion does not prevent convergence. Philos Trans R Soc Lond A (to appear).
Bouaud J, Seroussi B, Falcoff H, Julien J, Denke DL. Could Medical Practice Be Evidence-Based? a Case Study with French Hypertension Management Guidelines. AMIA Annu Symp Proc 2009.
Grabar N, Hamon T. Exploitation of speculation markers to identify the structure of biomedical scientific writing. AMIA Annu Symp Proc 2009.
Lamy JB, Venot A, Bar-Hen A, Ouvrard P, Duclos C. Design of a graphical and interactive interface for facilitating access to drug contraindications, cautions for use, interactions and adverse effects. BMC Med Inform Decis Mak. 2008 Jun 2;8(1):21.
Toussi M, Ebrahiminia V, Le Toumelin P, Cohen R, Venot A. An automated method for analyzing adherence to therapeutic guidelines: Application in Diabetes. Stud Health Technol Inform. 2008;136:339-44.
Lamy JB, Ellini A, Ebrahiminia V, Zucker JD, Falcoff H, Venot A. Use of the C4.5 machine learning algorithm to test a clinical guideline-based decision support system. Stud Health Technol Inform. 2008;136:223-8.
Lamy JB, Duclos C, Bar-Hen A, Ouvrard P, Venot A. An iconic language for the graphical representation of medical concepts. BMC Med Inform Decis Mak. 2008 Apr 24;8(1):16. (article résumé dans Science vol 320 du 2 mai 2008)
2007
Hanczar B, Henegar C, Saitta L, Zucker JD. Feature construction from synergic pairs to improve microarray-based classification. Bioinformatics, 2007;23(21):2866-72.
Duclos C, Nobécourt J, Venot A A bacteria ontology to help physicians to compare antibacterial spectra. AMIA Annu Symp Proc 2007.
Cuggia M, Darmoni SJ, Garcelon N, Soualmia LF, Bourde A. Doc'UMVF: two Search Tools to provide Quality-Controlled Teaching Resources in French to Students and Teachers; International Journal of Medical Informatics Vol 76/5-6;pp 357-62 (2007).
Lamy JB, Duclos C, Venot A. Graphical representation of medical knowledge. Brevet international.
PCT WO2007/131932, Université Paris13.
Choleau C, Albisser AM, Bar-Hen A, Bihan H, Campinos C, Gherbi Z, Jomaa R, Aich M, Cohen R, Reach G : A Novel Method for Assessing Insulin Dose Adjustments by Diabetic Patients. Journal of Diabetes Science and Technology, 2007, 1:1, 3-7.
2006
Hennegar, C., R. Cancello, S. Rome, H. Vidal, K. Clément and J.-D. Zucker. "Clustering biological annotations and gene expression data to identify putatively co-regulated biological processes." Journal of Bioinformatics and Computational Biology (JBCB), 2006, 4(4).
Bouaud J, Séroussi B, Falcoff H, Venot A,. Design Factors for Success or Failure of Guideline-Based Decision Support Systems: an Hypothesis Involving Case Complexity. AMIA Annu Symp Proc. 2006
Ebrahiminia V, Riou C, Seroussi B, Bouaud J, Dubois S, Falcoff H, Venot A. Design of a Decision Support System for Chronic Diseases Coupling Generic Therapeutic Algorithms with Guideline-Based Specific Rules. Stud Health Technol Inform. 2006;124:483-8.
2005
Lamy JB, Duclos C, Rialle V, Venot A Which Graphical Approaches should be Used to Represent Medical Knowledge? Stud Health Technol Inform. 2005;116:719-24.
Cancello, R., Henegar C, Viguerie N, Taleb S, Poitou, C Rouault C, CoupayeM, Pelloux V, Hugol D, Bouillot JL, Bouloumie A, Barbatelli G, Cinti,S, Svensson PA, Barsh GS, Zucker JD, Basdevant A, Langin D, Clement K.. "Reduction of macrophage infiltration and chemoattractant gene expression changes in white adipose tissue of morbidly obese subjects after surgery-induced weight loss." Diabetes, 2005, 54(8): 2277-86.
Zucker, J.-D. and L. Saitta, Eds . Abstraction, Reformulation and Approximation, 6th International Symposium, SARA 2005. Lecture Notes in Computer Science 3607 Springer.
Ebrahiminia V, Duclos C, Toussi ME, Riou C, Cohen R, Venot A. Representing the Patient's Therapeutic History in Medical Records and in Guideline Recommendations for Chronic Diseases Using a Unique Model. Stud Health Technol Inform 2005;116:101-6
Bousquet C, Lagier G, Lillo-Le Louët A, Le Beller C, Venot A, Jaulent MC Appraisal of MedDRA conceptual structure for describing and grouping adverse drug reactions. Drug Safety 2005;28(1):19-34.
Taleb, S., D. Lacasa, J. Bastard, C. Poitou, R. Cancello, V. Pelloux, N. Viguerie, A. Benis, J. Zucker, J. Bouillot, C. Coussieu, A. Basdevant, D. Langin and K. Clement "Cathepsin S, a novel biomarker of adiposity: relevance to atherogenesis. ." FASEB J, 2005, 19(11): 1540-2.
2004
Viguerie, N., K. Clement, P. Barbe, M. Courtine, A. Benis, D. Larrouy, B. Hanczar, V. Pelloux, C. Poitou, Y. Khalfallah, G. S. Barsh, C. Thalamas, J. D. Zucker and D. Langin "In vivo epinephrine-mediated regulation of gene expression in human skeletal muscle." J Clin Endocrinol Metab, 2004, 89(5): 2000-14.
Duclos C, Cartolano GL, Ghez M, Venot A. Structured representation of the pharmacodynamics section of the summary of product characteristics for antibiotics; application for automated extraction and visualization of their antimicrobial activity spectra. Journal of the American Medical Informatics Association, 2004, 11:285-293.
Courtine, M., J.-D. Zucker and K. Clément. Classification et caractérisation automatique des fonctions de gènes co-exprimés. Informatique pour l'analyse du transcriptome. O.Gandrillon and J. F. Boulicaut, 2004, 252-27.
2003
Hanczar B, Courtine M, Benis A, Hennegar C, Clément K, Zucker JD. Improving classification of microarray data using prototype based feature selection. ACM SIGKDD Explorations, Special issue on micro-array, (5)2:21-28, 2003.
Duclos C, Venot A. Building and evaluation of a structured representation of SPC's drug information about pharmacokinetics: from existing conceptual views of pharmacokinetics associated to natural language processing to object oriented design. Journal of the American Medical Informatics Association, 2003, 10:271-80
Zucker, J-D. A grounded theory of abstraction in artificial intelligence, in Philosophical Transactions: Biological Sciences 2003, , 358:1293-309. DOI: 10.1098/rstb.2003.1308
